The National Institute for Computational Sciences

Software

bowtie2

Category: APPLICATIONS > BIOINFORMATICS

Description

For more information see the bowtie2 website

Description appeared on the bowtwe2 website : "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. "

Use

bowtie2 is available as a module.

Once the bowtie2 module has been loaded, its executables can be used.

Support

This package has the following support level : Supported

Available Versions

Version Available Builds
Other
2.2.9
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